YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114189159, gi...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVTGAQPSS AQAHLALGNP RPDLGNDIVV QSRETGDVVP NETQKLVPGS GTNNQAKPWA  60
   61 HFFAGGIGGM TAATLTSPLD VLKTRLQSDF YQAQLRELRA AHPLPASPSA LTSLPRSALM 120
  121 HFNETFQILR SIHVHEGWRA LFKGLGPNLI GVVPARAINF YVYGNGKRLL SDYFGYRDVR 180
  181 ETPVGVHLTA AAVAGIATGT ATNPIWLVKT RLQLDKSNAE HGQGRQYKNS WDCIRQTVRH 240
  241 EGIRGLYKGL SASYLGVTES TLQWVMYEQM KMFLARREAA KRADPHYQYG AWDDVEVWGG 300
  301 RICSAGVAKL IAAAATYPHE VVRTRLRQAP TVSIGDGKVE MKYTGLVQCF KTVWKEEGMV 360
  361 GLYGGLTPHL LRVVPSAAIM FGMYEVILRL FGTTS

Type	Start	End	Confidence
Cytoplasmic	1	58	0.50
Transmembrane Helix	59	79	0.46
Non-Cytoplasmic	80	185	0.53
Transmembrane Helix	186	207	0.54
Cytoplasmic	208	368	0.50
Transmembrane Helix	369	388	0.44
Non-Cytoplasmic	389	395	0.63