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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115402989, gi...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNETPRLRSA FPQTPQTAPR SRDFTTPTSK PRSRDAVQRR SPTKPPPPTA PDAPSPLIPV  60
   61 SLIDAPSQRL YVVAFYIALN AWRLYESYTA SDDLDSTWLF LKWASIDGVF LFGLQALRIP 120
  121 WLEWAFPTTL ALFLLHVAGN IFLMFQIPIP LGMWFTSMIK VAYDRELSIS ERSVKPADII 180
  181 HNASLILGKQ IVHILPEGSA TLNPDQVPLC IDSQNTAVSL PIRINQTDPI LIELFRLDFN 240
  241 TGDNETISYP SKQLKQIKRH SEKHHPISSD ALHRDLLLPV RRPGLYRLQR VVDESNLDVH 300
  301 LRVSDALVVS CPRALIKNSH THKCRGDLSN LVLTVEGTPP LKIKYSRQVN RLDRGFSFQN 360
  361 IQPDHLRSPL LSQRNSGILF NAREPDVAWA QSQVIELPLN ESLNVGGEWL YSIEEVHDGS 420
  421 GNVANYSTLL DELDRPSTKS QSQWHQFSVH ERPRLSLSGC NAQHFIEVAR GENVDLPLKF 480
  481 HQSGQGYEGD GPFSLMYSFS GGDQESEDGS PGKIRQLTLK SLNQRPQIRE SGWYNLNSVS 540
  541 SQFCSGEVLE PSSCFLHNPP EPEVTVKYEK VFDKCANNPV GLLVDLDLTG SPPFRLRYVI 600
  601 EHSKGVETKS QTIDGLRTQL DFTPSEAGSY RYRFLDIADT VYAPRSLKDK TPVLEQDVKP 660
  661 PASAHFLGSR EVRKACFGEP VSVDVAFLGE SPWTLQYELV HNGKKTKHVL ESDSDVSTIV 720
  721 TDKLVSGGEY NLVLTSVKDR SNCKRALKDS IKIQARSKPP RASFGEIEKS RSYSALQGSK 780
  781 IDIPLRLSGE RPWTVRYKTD TDSSATEKTF WQENSALTVG QEGRYELLSV SDASCPGSVD 840
  841 PAANAFEISW IPRPRITAVD GSPVSDSGRL EKRDVCQGVD DSLEIRLSGN PPYSIRYEQQ 900
  901 RKSARGSPSM RVQSVKTALH ATSIEMDTSE PGLYTYKFTG VGDNLYDNDP RSVPVVVTQT 960
  961 VNPLPSARFD APGRIYGFCK EDVSGEELIP VTLEGVPPFA LEISIKHHSK AKPEIVSIPN1020
 1021 INSNRHNLPI PRRHLDLGQH VVSIRKVQDA RGCQRTTEFD TSSVRVAVSD VPTIIPLESK1080
 1081 TDYCVGERLS FSLSGHAPFD VFYTFDGASR KATSRTTNFR RIAERPGVFT ITGVSDGASG1140
 1141 KCKAHKNITK TIHEMPSVRI SRGQTSVIDI HEGGEAELNF EFWGTPPFEF TYIRSSNTRK1200
 1201 GKKPEILDIK HDISYEHMKT IKTSDEGTYE VVAIKDKYCS FSSQAQIEKS EKSAPGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle