YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT222_ASPTN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	54	0.89
Non-Cytoplasmic	55	118	0.96
Transmembrane Helix	119	140	0.90
Cytoplasmic	141	149	0.81
Transmembrane Helix	150	169	0.96
Non-Cytoplasmic	170	175	0.81
Transmembrane Helix	176	199	0.88
Cytoplasmic	200	277	0.96
Transmembrane Helix	278	297	0.97
Non-Cytoplasmic	298	305	0.78
Transmembrane Helix	306	328	0.91
Cytoplasmic	329	371	0.98
Transmembrane Helix	372	396	0.89
Non-Cytoplasmic	397	405	0.89
Transmembrane Helix	406	429	0.90
Cytoplasmic	430	439	0.86
Transmembrane Helix	440	463	0.88
Non-Cytoplasmic	464	479	0.87
Transmembrane Helix	480	500	0.89
Cytoplasmic	501	510	0.89
Transmembrane Helix	511	533	0.83
Non-Cytoplasmic	534	541	0.77
Transmembrane Helix	542	561	0.94
Cytoplasmic	562	591	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDDEITENI QPPPQYPGDD TRPTSKKELV GWYSYGWAAE VFTVCAMGSF LPITLEQMAR  60
   61 DSGVLLADKT TPCSATWKTP QGTSPTLSAD TTGLWSSQAP RTSQCIVHIL GAEINTASFA 120
  121 MYTFSVSVFV QAILIISMSG AADHGSYRKI LLVACALIGS ISTMMFIAVK PNLYILGGLF 180
  181 AVVANTCFGA SFVLLNSFLP LLVRHHPSLL AKHRQAGASP NGDRPPATHR AHRTEDEVNV 240
  241 TTPLLPSGST NTDGATQESV SDTSLELKLS TKISSNGIGI GYIAAVILQI ICIVVVVNTN 300
  301 QTTFSLRLVL FLIGLWWFIF TFPAALWLRP RPGPPLRYAD GGKERRSWLG YIAYAWKSLG 360
  361 RTAMRTRHLK DILLFLASWF LLSDGIATVS GTAVLFAKTQ LDMEPAALGM INVIAMMAGV 420
  421 FGAFSWSYVS RVLNLRASQT IIACIILFEL VPIYGLLGFI PAIKRLGFIG LQQPWEMYPL 480
  481 SFVYGLVMGG LSSYCRSFFG ELIPPGYEAA FYALYAITDK GSSIFGPAIV GAITDRYGEI 540
  541 RPAFGFLAIL ILLPLPLMLL VDVDRGKRDA QALSAELEGT RDEPVADGSL E