YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114194884, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.91
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	72	0.96
Transmembrane Helix	73	94	0.94
Cytoplasmic	95	104	0.75
Transmembrane Helix	105	123	0.94
Non-Cytoplasmic	124	140	0.84
Transmembrane Helix	141	161	0.94
Cytoplasmic	162	280	0.97
Transmembrane Helix	281	305	0.81
Non-Cytoplasmic	306	322	0.89
Transmembrane Helix	323	346	0.86
Cytoplasmic	347	366	0.90
Transmembrane Helix	367	388	0.86
Non-Cytoplasmic	389	397	0.83
Transmembrane Helix	398	417	0.91
Cytoplasmic	418	454	0.92
Transmembrane Helix	455	476	0.84
Non-Cytoplasmic	477	488	0.83
Transmembrane Helix	489	509	0.88
Cytoplasmic	510	523	0.79
Transmembrane Helix	524	541	0.95
Non-Cytoplasmic	542	558	0.77
Transmembrane Helix	559	582	0.86
Cytoplasmic	583	599	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWYKATRAAF AAALLLASIA SALPHGDEAM DMGGMDMGDM DMHASHPEHE SHADTSDDSP  60
   61 MSYFAYGKHS STIVAHIALM VLAWCFVLPI AVMFSVARSR YALPSQFLFL LVNAFGLLVG 120
  121 IIYNSQTPDL YENNAHHKIG WIATWVISAQ VIMALIFAYA GRGESDSSSY ERAAFLPVST 180
  181 DDGAESPTYP SGIRHEYRWS RDSGQGTERS TASLHSRPGS PSCSSPSEEF ESFHKPEDEI 240
  241 LEKPVERRGW LQSTFIDRFL ASRVPRMVSS RVLRVLHVIY IIIDRIILPF GFISIATGAV 300
  301 TYGGIMRGSE VFNGLAHFIK GGIFFWYGLL TLGRFLGCWA DFGWAWNIKP SSAIVGKWKS 360
  361 KIPTGEFTES FVIFLYGASN VFLEHLAGWG GAWSATDLEH VSISIMFFGG GLCGMLVESK 420
  421 RVKSWLNSTI LRTPSHLGTH ASSDVAWQLP DTQGVSLNPM PALIIMLLGS MMGSHHQDSM 480
  481 VSTMIHKQWG NMFVGFALAR GATYVLLYIK PPTSYLPSRP PTEIIAAFCL ISGGLVFMLS 540
  541 TRNVVQTIEY YDLDAMFTFT VSMGFTAFIM ALEILAVAIK AWAVKKESRP QLAPYQFPA