YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114195292, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	186	0.99
Transmembrane Helix	187	206	0.97
Cytoplasmic	207	215	0.85
Transmembrane Helix	216	237	0.89
Non-Cytoplasmic	238	261	0.79
Transmembrane Helix	262	282	0.85
Cytoplasmic	283	290	0.88
Transmembrane Helix	291	314	0.87
Non-Cytoplasmic	315	321	0.78
Transmembrane Helix	322	342	0.94
Cytoplasmic	343	366	0.90
Transmembrane Helix	367	389	0.93
Non-Cytoplasmic	390	407	0.93
Transmembrane Helix	408	428	0.91
Cytoplasmic	429	536	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGWIQTLCL TALLAGRTLA NEVELTQDEA HQQRCSGMYS RKAWGGSVDP FILTKFSPQS  60
   61 DIGDSDPLVS LVIFEWTDES LIGRVESGDT QEKATICDEA SVQEKLCEQD QIGSFILAAN 120
  121 ASDASKFPIL TKAVHLNDPA AINYPVKKTG FYCVSTYGYS GRDYKAVVEF RNAYGELPAA 180
  181 QIAKLPFYGA LTIVYAVIGI FWAFLYVQNR HDILPVQNYI TAILVFLIVE QLMTWGFYDY 240
  241 QNRHGLNVGA KALMIIVAVL NAGRNSFSFF LLLIVCMGYG VVKPSLGRTM VYVRILAITH 300
  301 FVFAVIYAVA SLSITPDSAG PLVLLIVLPL AGTLTAFYVW TLNSLNATMK DLVDRKQKVK 360
  361 ALMYKKLWWC ILGSIIVIFG FFFINSIAFA GRSEASFVPE HWKSRWFVLD GWLNLVYLFD 420
  421 IAFVAYLWRP TANNRRFAMS DELAQDDDGF EIRSFGSALD EEDALGGPEG HSAPESRRDL 480
  481 SPVPPKPVPS APRQRDSLDG ETIFAVGEDG DKWTDDEDES PRNSSERKRL TGKNSD