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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115387627, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRRNSSTS QHSLISYHSV DVDHTPSPSR SRSHSPERLP DPVPYNSPND SESQATPGRG  60
   61 TPHRVHFGSD LRFEYDGQHD TTETDLSADE RTQQAAAGAH GSVDITDVTR GRASTERPSS 120
  121 SDSPKGSGSG SPAQKRSSPG RSAMPGASFF DRMNSLRHRT KAKARRLAAQ LGRPLSDEND 180
  181 LQPTHEPELD ESQAADGEHD AHDEKRPEHD SLTSEAHRLV RQLTEDRSTR RRMSQAQPNA 240
  241 LTAQGPEYAG EELALDPRLQ RTESHGGGGI LSQLLRLNAA LDAQRRSSRS QSPSESATPG 300
  301 TTTPRKLKWY KKKGGNLSTS TLVGGVGGGG SYSGASTPVS SEVLTAASKR RSKEQRSGMR 360
  361 LEDEIQVTLQ IAQIIARQRY IMQLCKALML FGAPTHRLEE YMQMTARVLE VDSQFLYVPG 420
  421 CMIMSFDDPS TRTAEVKLVR VGQGIDLGRL ADTHNIYKNV VHEVIGIEEA IHELEEIMRK 480
  481 RPRFNKWIIV LVYGLATATV GPFAFNARPI DMPIIFFNGC LLGIMQHVIA PRSVLYSNVF 540
  541 EVSAAVLTSF IARALGSIMT DIHGQREYLF CFSAIAQSSI ALILPGYTVL CSSLELQSHQ 600
  601 IVAGSIRMVY AIIYSLFLGF GITVGTTIYG LIDKNAISST TCPAPGAFKN PYVQRFPFVV 660
  661 AFAVCLMVVN QGKWRQTPMM VTIALAGYVT NFFVTRRLGS NSQVASTVGA FAIGVIGNLY 720
  721 SRLWHGHAAT AILPGIFVLV PSGLAASGTL IAGVQSADEI RSNVSSSSAN RSSNNGGSTQ 780
  781 GHSVDLSSQV LGFGMVQVAI AITVGLFVAA LVVYPFGKRR TGLFSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle