YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106881932, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	257	0.98
Transmembrane Helix	258	280	0.86
Cytoplasmic	281	285	0.57
Transmembrane Helix	286	304	0.80
Non-Cytoplasmic	305	313	0.64
Transmembrane Helix	314	334	0.90
Cytoplasmic	335	346	0.73
Transmembrane Helix	347	365	0.83
Non-Cytoplasmic	366	397	0.81
Transmembrane Helix	398	415	0.96
Cytoplasmic	416	440	0.86
Transmembrane Helix	441	463	0.88
Non-Cytoplasmic	464	480	0.78
Transmembrane Helix	481	503	0.87
Cytoplasmic	504	512	0.69
Transmembrane Helix	513	531	0.91
Non-Cytoplasmic	532	547	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIFSLLVF SCMSWFALAE NAPATESNTQ FETLLAQLPS TKLSKMAPLV DKIAAQPSPQ  60
   61 VPELLQHLME GELYYLKAAN ELVYAQPNQQ QTYDLTSVLK TEALAPVSIY ALKKIRTNNR 120
  121 IRGQIRDLLA NMYLSNSSPA VRLQAIKQLL DNPSKTGITS ITRLIKTEQE KEIRELMSVV 180
  181 LLIEQLEKGQ TAEKLAAISQ LEGRLEPTVK NALVKELKKL SASQDLSISQ DKSELHKALT 240
  241 RAIGQMEQDG DFYQLLDYLF FGLSMGSVLL LAAIGLTITF GVMGVINMAH GEMMMLGAYT 300
  301 TYVIQQTFPN LIEYSLLMAV PAAFLVSGLV GVLIERGVIR FLKGRPLETL LATFGISLIL 360
  361 QQLVRTVFSP LNRQVEAPQW MSGSLEINPI FSLTYNRLYI IIFALMVFFS LLMILKKSSL 420
  421 GLHVRAVSQN RDMARALSIK SSWVDAITFG LGSGVAGIAG VALSQLTNVG PNLGQDYIID 480
  481 SFLVVVFGGV GSLWGTLVAA MTLGTFNKFL EPSMGPVLAN IIVLVGLVLF IQKRPKGLFP 540
  541 QKGRSAE