YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106881960, gi...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSPATTS NVISFRIDNS FPLEITDLLT DIAFIMDNDM TKILSFYFAL LFCAAANGQT  60
   61 LLILGDSLSA GYNMSIEQSW PSLLSAELQA LDKSTTVVNA SISGDTTDNA LARLPELLSL 120
  121 HQPSSVLIEL GANDGLRGFP PALVMGNLKK MINLIKAQNG SPILMQIQVP PNYGKRYSEA 180
  181 FSSLYPQLSE KYNTPLIPFF LEQVIVKPQW MMNDGLHPTA EAQPWIAQYM AKQLAPYLKN 240
  241 R

Type	Start	End	Confidence
Cytoplasmic	1	42	0.59
Transmembrane Helix	43	65	0.64
Non-Cytoplasmic	66	241	0.86