YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106884708, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.81
Transmembrane Helix	16	36	0.91
Non-Cytoplasmic	37	54	0.62
Transmembrane Helix	55	83	0.59
Cytoplasmic	84	94	0.80
Transmembrane Helix	95	117	0.90
Non-Cytoplasmic	118	134	0.81
Transmembrane Helix	135	155	0.90
Cytoplasmic	156	174	0.81
Transmembrane Helix	175	195	0.94
Non-Cytoplasmic	196	201	0.80
Transmembrane Helix	202	223	0.88
Cytoplasmic	224	234	0.73
Transmembrane Helix	235	257	0.80
Non-Cytoplasmic	258	281	0.84
Transmembrane Helix	282	302	0.88
Cytoplasmic	303	312	0.83
Transmembrane Helix	313	330	0.84
Non-Cytoplasmic	331	336	0.60
Transmembrane Helix	337	358	0.81
Cytoplasmic	359	363	0.56
Transmembrane Helix	364	383	0.90
Non-Cytoplasmic	384	390	0.56
Transmembrane Helix	391	413	0.88
Cytoplasmic	414	751	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKAFGVLQ RVGRSFMLPI AVLPVAGLLL GLGSSFTNET TLATYNLLGI MGPGTAIYNI  60
   61 LTIMSKCGSV IFDNLPLIFA VGVAIGMAKK EKEVAALSAM IAFFVMHSAI SGMVSIYGGP 120
  121 EAFISGATGT VLGMTSLQMG AFGGIIVGLG VAALHNRFYK IELPAAFAFF QGTRFIPIIS 180
  181 TVVFTFVGIL MFYIWQPIQI GINGLGGVVQ STGIIGTFIF GLIKRLLIPF GLHHVFYLPF 240
  241 WQTAIGGTME IAGKTIIGAQ NIFFAQLADP STVHFSTLAT RFFSGEFIIY IFGFPGAALA 300
  301 MYRCARQEKK KEVYGLLLSA ALTSIMTGIT EPIEFSFLFV APVLFGISAV MAGLAYAIAQ 360
  361 ALNIAVGLTF SGGFIDLFLF GILQGNRKTS WLLIIPVGIV YFLVYYYIFS FFIKKMNLKT 420
  421 PGREADNEES KLYTRADYEK KKNVSKDEKG SDVDELSAAI TEGLGGKANI SDVDCCATRL 480
  481 RVTVFDGNKV EDNILKSTGA SGVIHKGTGV QVIYGPRVTV IKSNLDDYLA TTSDVAEKKD 540
  541 FAKAANTENK NYENNVSKVN SADKQNSADK QSSEDKQDTV DKQSTVDKQS SANKQSNADK 600
  601 QGKETIIFAP LSGKVIELTD VNDGVFSEGM LGKGFAIEPS EGKVVAPCDC KVETVFDTKH 660
  661 AIGLSCGNVE LLIHIGIDTV ELNGKGYDIK IHDGDVLKKG DVIGYFDINL ITEAGYRVVT 720
  721 PVIVTNTDDF ESIEILKKDS IKAEERVMSV K