YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106774680, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLWGNLFGK EDKKVTISAE ETKVFKNIED NLDRIKSILE DCGDVIYREF VIGEGKGCKA  60
   61 ALVYIDGLVK TDVLNDYVLE NLMVESRMAP PNKKINREEL SDTIKEKTLA VSEFKEVETI 120
  121 EEAVLNVLSG DTAFLLDEYE KMLIIATKGW SSRGISQPET EAVVRGPRDG LVENLRVNTA 180
  181 SIRRRIRDPK LKLKGKQIGK RSKTDICVMY IEDIVNQKCL EEVNKRLDTI DIDAIMDSGY 240
  241 IEQLIEDNWR SPFPQIQSTE RPDVVAASLY EGKVIILVDN SPFALIAPAS FNAMMQSAED 300
  301 YYDRWGIASF IRVLRYIGAI ISLYAPSLYI AITAFHPQML PSNLSHSIAS NREGVPFPSV 360
  361 IEAIVMELTL EMLREAGVRL PGPIGATIGI VGGLVIGQAA VEAGIVGPIM VIIVAITAIS 420
  421 SFSIPRYNLA IGLRLLRFFL IIASAILGLY GVMLVTIFII IHLCSLKSFG IPYLTPFTTY 480
  481 ISKYTDLKDT LIRAPLSAMH LRPTLVNPKQ KVRMKDRRKE DFNKEE

Type	Start	End	Confidence
Cytoplasmic	1	312	0.72
Transmembrane Helix	313	335	0.86
Non-Cytoplasmic	336	353	0.59
Transmembrane Helix	354	370	0.38
Cytoplasmic	371	379	0.55
Transmembrane Helix	380	400	0.79
Non-Cytoplasmic	401	404	0.61
Transmembrane Helix	405	425	0.89
Cytoplasmic	426	437	0.70
Transmembrane Helix	438	462	0.91
Non-Cytoplasmic	463	526	0.81