YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157117432, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	155	0.74
Transmembrane Helix	156	176	0.71
Cytoplasmic	177	325	0.83
Transmembrane Helix	326	344	0.90
Non-Cytoplasmic	345	349	0.67
Transmembrane Helix	350	367	0.87
Cytoplasmic	368	383	0.72
Transmembrane Helix	384	404	0.86
Non-Cytoplasmic	405	419	0.76
Transmembrane Helix	420	441	0.88
Cytoplasmic	442	458	0.70
Transmembrane Helix	459	481	0.76
Non-Cytoplasmic	482	501	0.93
Transmembrane Helix	502	522	0.92
Cytoplasmic	523	613	0.98
Transmembrane Helix	614	633	0.96
Non-Cytoplasmic	634	640	0.78
Transmembrane Helix	641	658	0.89
Cytoplasmic	659	671	0.77
Transmembrane Helix	672	694	0.84
Non-Cytoplasmic	695	713	0.86
Transmembrane Helix	714	737	0.85
Cytoplasmic	738	760	0.80
Transmembrane Helix	761	785	0.77
Non-Cytoplasmic	786	804	0.70
Transmembrane Helix	805	828	0.89
Cytoplasmic	829	831	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKTKHKNV VFKLLKFNED EEKNDLQRNG CSKQKLTPNY SIISLSQVTE ASLEIWRTLP  60
   61 AAIRQDPSLA SFRQEHERLH VTNPSQNGDG TDSASGKLTA TTTATATPSP RAGNKNQQNG 120
  121 EKHGHNTTMD GPEGDEHEVT MHSMHGHPHQ QHGKVFSYVK ISALLVVWLI FTGFLMSKNE 180
  181 KELEPRQMSI PEGRIRKTPP GSRVGIYLKG AFLNDQQHNM TSNYVSVNLQ LLYTHSNSSN 240
  241 LTNIQDHDVK HVENVTDAWL VPVPVYPDQM DRMDEITRKH VFDIGTASHK KVSNGKAVIR 300
  301 VHMSSNVDAD VPVKFTFDPT PIDKETGVIY AAIVLLGLYV LIIWEIVNRT FAAMIASTLA 360
  361 IGVLAAMDER PSMPKLISWI DVETLLLLFG MMIMVAILSE TGIFDFLAVY AYQVTNGRVW 420
  421 PLINCLCIFT AVLSSFLDNV TTVLLMTPVT IRLCEVMELN PVPVLMSMVI YSNVGGTLTP 480
  481 VGDPPNVIIA SNSYISKNGV NFATFTLHMA IPIAIVMVTT YFQLRMKFKT ISDLRFSEPQ 540
  541 DVQEIRHEIA VWQRAAASLS SYSKDEDLVR ETLLKKVNKL SRSLKKKLVS GSVPVEYKTT 600
  601 LEELKNKYPI RNKVLLVKSA VTLVFVITFF FLHSAPDIQK LSLGWTALLG AVLLLILADR 660
  661 EDIESVIARV EWSTLLFFAA LFILMEALAE LGLIEWIGKQ TENVILSVSE ESRLAVAILL 720
  721 ILWVSAFASA FVDNIPLTTM MVKIAIGLAE NEALDLPLKP LVWALALGAC LGGNGTLIGA 780
  781 SANVVCAGVA EQHGYRFTFI EYFKVGFPVM VGSVIVSTVY LLFAHVVFTW H