YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108883176, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	133	0.98
Transmembrane Helix	134	154	0.88
Non-Cytoplasmic	155	160	0.77
Transmembrane Helix	161	184	0.88
Cytoplasmic	185	204	0.92
Transmembrane Helix	205	226	0.91
Non-Cytoplasmic	227	231	0.71
Transmembrane Helix	232	248	0.88
Cytoplasmic	249	255	0.71
Transmembrane Helix	256	277	0.79
Non-Cytoplasmic	278	282	0.64
Transmembrane Helix	283	303	0.80
Cytoplasmic	304	325	0.73
Transmembrane Helix	326	347	0.53
Non-Cytoplasmic	348	352	0.53
Transmembrane Helix	353	371	0.63
Cytoplasmic	372	384	0.76
Transmembrane Helix	385	402	0.85
Non-Cytoplasmic	403	487	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRFTAISRV WCESARRLTT HQSLPPKAQG HLQIVRLYVN KAPVDQLKVT AAKTQPDDKH  60
   61 ALGKQQVPHS VPLAVPVIVP PAALDPKALV NEISKTINLT SAADGRSKKP KDEVVASITS 120
  121 LPGFSRLIYH YLMLSKIRLT SLVVMTTMAG YAMAPAPFEL STFLLCAVGT TLVSGAANSI 180
  181 NQVIETSFDA QMPRTRNRVL VKGHLSRLHA VGFALGASSI GVGMLYFGVN ELTAFLGAAN 240
  241 LILYTSIYTP MKRYSILNTW VGSLVGGIPP LMGWAACTGD IGVGAWILAG LLYCWQFPHF 300
  301 NALSWNIRPE YLKAGYKMMA NSHPKLCTLV SLRHTGYITA LSLLAPAFDV TNVWFAVESL 360
  361 PVNAYFAYLA WDFHQKADSK SSRKLFRFSL IHLPILMALF LLNKKHWIFS QDKNTEETLA 420
  421 AIAPEGTLDA ELIDEQKNKK DEYLVPNIVV EVGNLGATGG SIKAIEDNLL TNVASVLPTT 480
  481 TAGKQKL