YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_ALTMD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLFRETGL RFLWISALAF ILDQWSKYTV IDTMSLYQSI QVLPFFNFTY VHNYGAAFSF  60
   61 LENAGGWQRW FFTAIAVVVS VVILWWLKQS PRSQKMLPVA FAFILGGALG NVYDRLVHGY 120
  121 VIDFLDFYVN NYHWPAFNIA DSAIFIGAAL LIIDMFKNGD KKSEENGAES KAGSANSSET 180
  181 IK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	28	0.86
Non-Cytoplasmic	29	66	0.90
Transmembrane Helix	67	87	0.94
Cytoplasmic	88	95	0.91
Transmembrane Helix	96	117	0.88
Non-Cytoplasmic	118	133	0.92
Transmembrane Helix	134	153	0.94
Cytoplasmic	154	182	0.95