YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88797687, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAETLTCRA AVAWAAGEPL KVETVQVAPP KAGEVRIKVV ASGVCHTDAF TLSGDDPEGI  60
   61 FPAILGHEGG GIVEAIGEGV TSVSVGDHVI PLYTPECGEC KFCLSGKTNL CQKIRTTQGQ 120
  121 GLMPDGTSRF SIDGQPIFHY MGCSTFSEYT VLPEISLAKV NPQAPLEEVC LLGCGVTTGM 180
  181 GAVMNTAKVQ SSDTVAIFGL GGIGLSAIIG ATMAGASRII AIDINESKFD LAKQLGATDC 240
  241 INPKDYDQPI QEVIVELTDG GVDYSFECIG NVDVMRSALE CCHKGWGESV IVGVAGAGQE 300
  301 ISTRPFQLVT GRVWRGTAFG GVKGRSELPS YVERYLDGEF KLSDFITHTM PLDEINEAFD 360
  361 LMHEGKSIRS VVHF

Type	Start	End	Confidence
Cytoplasmic	1	168	0.55
Transmembrane Helix	169	184	0.40
Non-Cytoplasmic	185	194	0.60
Transmembrane Helix	195	217	0.76
Cytoplasmic	218	374	0.57