YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88808080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAERQRDLM LRSRRAMRWL QPGLVVKRWL LTSGIGLVLA LIGAAVWADL QPIYWTLWAI  60
   61 QEVLGWITRV LPRGITGPLM LLAGIGLLLW GQSRSFGSIQ QALAPEKDTV LVDALRAKSR 120
  121 LNRGPNIVAI GGGTGLSTLL SGLKRYSSHI TAIVTVADDG GSSGVLRREL GVQPPGDIRN 180
  181 CLAALSTEEP LLTRLFQYRF SSGTGLEGHS FGNLFLSALT AITGNLETAI TASSRVLAVQ 240
  241 GQVVPATNAD VRLWAELEDG RRIEGESAIG KAPNPIVRLG CLPERPPALP RALEAIAQAD 300
  301 LILLGPGSLY TSLLPNLLVP ELVTAIQRSR APRLYICNLM TQPGETDGLD VSGHLRAIEA 360
  361 QLASLGINQR LFDAVLAQEA IADSPLIAHY RSRGADPVVC NRRQLISEGY EVMEAPLQGS 420
  421 RPTATLRHDP RSLALAVMRF YRKHKKDLQG SAAQQAADQ

Type	Start	End	Confidence
Cytoplasmic	1	24	0.93
Transmembrane Helix	25	48	0.90
Non-Cytoplasmic	49	69	0.86
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	123	0.87
Transmembrane Helix	124	143	0.64
Non-Cytoplasmic	144	459	0.77