YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88912775, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	58	0.74
Transmembrane Helix	59	80	0.79
Cytoplasmic	81	87	0.73
Transmembrane Helix	88	107	0.58
Non-Cytoplasmic	108	108	0.34
Transmembrane Helix	109	130	0.73
Cytoplasmic	131	149	0.50
Transmembrane Helix	150	177	0.79
Non-Cytoplasmic	178	189	0.52
Transmembrane Helix	190	209	0.61
Cytoplasmic	210	249	0.89
Transmembrane Helix	250	272	0.94
Non-Cytoplasmic	273	279	0.86
Transmembrane Helix	280	301	0.92
Cytoplasmic	302	312	0.83
Transmembrane Helix	313	331	0.97
Non-Cytoplasmic	332	337	0.72
Transmembrane Helix	338	360	0.93
Cytoplasmic	361	380	0.84
Transmembrane Helix	381	402	0.87
Non-Cytoplasmic	403	412	0.82
Transmembrane Helix	413	433	0.92
Cytoplasmic	434	688	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAVGTSDLR GVLRIPSFRK LWTALAVSSF GDWLGFLGQT ALAASLASGH TYLAQNFSVG  60
   61 TVVFVRLLPA VTLAPLAGAL ADRLDRRLTM VIADIGRFAL YASIPIVHTL WWLFVATFLI 120
  121 ETLSLFWIPA KEATVPNLVP RERMGDAGSL NLLGAYGTAP IAAAVFALLS LLTGVLARWI 180
  181 PLFTTNRVDL ALYFDAVTFL VSAATIFSLR EISTHGGRRR TADGVVTHPS VFRSIVDGWR 240
  241 FMGQTPVVRG LAVGMLGAFG AAGVVIGVAT IYVRDLGGGG AGYGMLFGAV FLGLAIGMFT 300
  301 GPRVLRGFSR RRLFGLSIAA AGVILAATAL VHNLVLVVFG ALLLGCCAGI AWVTGYTLLG 360
  361 LEVEDATRGR TWATLQSLMQ VDILLMVAAG PFLSGGIGTH VLRIGDVTFP VNGSAMTLLF 420
  421 AGIGALVVGL VAYRQMDDRD VPLWRDFIDA VFGWHPLTGR GVATGFFVAF EGGEGAGKST 480
  481 QVELLARYLA DRGYEVVVSR EPGGTPLGHR LREILLDPRE PAPSPRAEAL LYAADRAEHV 540
  541 AKVIRPALAR GAIVISDRYV DSSLAYQGGG RDLSPRDVEQ LSRFATSGLR PDLTVLLDVP 600
  601 PDEGLARTGR RDRAPDRLQA EDAAFHERVR NVFRQRAEAD PERYLVIDAR LSAADIHRLV 660
  661 VQRILPVLPF PPKRAPRDPL PSTAGGTP