YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88935024, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRTERFNRA DRVIKIGFWI NGLLMVMKLL AGHFGNSEAV FADGVESACD FVAILSTIIA  60
   61 LNIGRKPFDE KHPYGHGKAE SLSAILVSLV IFSTGAGILY KAVKTIMAGA YEEPQLIAVL 120
  121 AAFATIFIKE WLCRFSLKVG GSLGSPAVMA IAKDHRKDAV TSVATLIGVT GAFFGVKIMD 180
  181 PLAAGLTAFF IFHIGYETFR SAAHDLMDGQ PPQELLNSIS MLAEGVDGVE HVHEIKGRRS 240
  241 GQYMIVDLKL DMDPEMTVKQ SHAIATEVKR LIFERFPNVG DVMIHINPHD EEHEDLIRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.97
Transmembrane Helix	13	34	0.87
Non-Cytoplasmic	35	43	0.75
Transmembrane Helix	44	64	0.83
Cytoplasmic	65	81	0.83
Transmembrane Helix	82	103	0.89
Non-Cytoplasmic	104	113	0.77
Transmembrane Helix	114	133	0.81
Cytoplasmic	134	158	0.78
Transmembrane Helix	159	176	0.66
Non-Cytoplasmic	177	181	0.42
Transmembrane Helix	182	199	0.62
Cytoplasmic	200	299	0.70