YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109674555, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	33	0.84
Non-Cytoplasmic	34	50	0.84
Transmembrane Helix	51	70	0.86
Cytoplasmic	71	84	0.79
Transmembrane Helix	85	106	0.90
Non-Cytoplasmic	107	112	0.64
Transmembrane Helix	113	131	0.88
Cytoplasmic	132	138	0.81
Transmembrane Helix	139	161	0.90
Non-Cytoplasmic	162	169	0.82
Transmembrane Helix	170	192	0.92
Cytoplasmic	193	212	0.96
Transmembrane Helix	213	234	0.91
Non-Cytoplasmic	235	239	0.80
Transmembrane Helix	240	259	0.86
Cytoplasmic	260	270	0.78
Transmembrane Helix	271	292	0.92
Non-Cytoplasmic	293	307	0.80
Transmembrane Helix	308	327	0.87
Cytoplasmic	328	334	0.67
Transmembrane Helix	335	352	0.83
Non-Cytoplasmic	353	358	0.45
Transmembrane Helix	359	386	0.69
Cytoplasmic	387	391	0.67
Transmembrane Helix	392	414	0.86
Non-Cytoplasmic	415	427	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAFLFILL FGLMLIGVPV AVSLGTSTVL TMIFFTDLDV AGIPQLIFDG INKFSLMAIP  60
   61 MFILAGNLLS KGGSARRIID FAKSMVGHLP GGLPMSAIFA CIIFAAVSGS SPATVVAIGS 120
  121 IMFVAIKEAG YPKEYAVGGI TTAGSLGILI PPSVVMIVYG VTAEVSIGKL FMAGVVPGLM 180
  181 LGAMMLAQTY IGARRLGFRA TTPEPASERM RKFGKAFWAL LIVVVVIGGI YGGIFTPTEA 240
  241 AAASAVYALF ISLFVYKDIK FKDLWDICLD SALTTAMIFF IIANAVVFAY LLTSEQIPQA 300
  301 IADALLDANI GKIGFLIFVN ILLFIMGQFM EPSSVIMIMV PLLLPISTQL GIDPIHFGII 360
  361 LVVNMEIGMV TPPVGLNLFV ASGLTGMNLK DVIVACIPWT LTLFVGLVLV TYIPEISLWL 420
  421 PNLMYGK