YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89073410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSITQAALG ASVAAVVAGR HCKPKTLIAG AALGTLPDLD VFISYGDAIS DTVKHRGFSH  60
   61 SLFVLLPFSL LLTVLWYRFR PTVLTFSRLW LLIAACLITH PLLDSFTTYG TQLFWPLDVS 120
  121 VAISSIFIID PLYTLSLLVM LIASLMWREK MAKLCGLGLL ISSSYLVWSV VAYSIINQRL 180
  181 HDEVKSTPLA NKPIFISPTP FNTVLWRIII LDGNKYNEGF SSLLDSKKNG AYSIQWAQRE 240
  241 RGSWPLEQTS KHVNDLIKFS NNFMQYKTID NQVVVTDLRL GLTEYLPFRF VVAKRAPQKD 300
  301 WQLIPPIKIE KQKVKPEHLP ALWLRLLGNQ DVNADLCHIN ECPEVTASQS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.55
Transmembrane Helix	26	43	0.51
Non-Cytoplasmic	44	56	0.81
Transmembrane Helix	57	77	0.91
Cytoplasmic	78	85	0.80
Transmembrane Helix	86	103	0.92
Non-Cytoplasmic	104	120	0.76
Transmembrane Helix	121	145	0.85
Cytoplasmic	146	153	0.85
Transmembrane Helix	154	176	0.90
Non-Cytoplasmic	177	350	0.93