YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89099694, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVYSIFISL IFVLNVIFAI IVIFLERRDA GGTWAWLMVL FFIPILGFIM YFLFGQNLAR  60
   61 RKMFQWEDRE KVGIDEMIRQ QVQSIKNQLF SFRNETIRDS YDLIYMHLIN NEAVLTQDNE 120
  121 VEIFTDGRKK FDSLIGDIKS AQDHIHLQYY IFKKDNLGKG LVSLLTEKAK EGVKVRVLYD 180
  181 ELGSRGVTKR FFRELRAAGG EVEAFFPSKL PFINIRVNYR NHRKLAIIDG KIGYVGGFNV 240
  241 GDEYLGLDPS FGYWRDTHLR ITGEAVHAIQ TRFILDWNQA SHRHDIHYHT RYFPESAGSG 300
  301 NIGIQIVNSG PDSEWEQIKN GYIKMISSAK ESIMIQTPYF IPDASLLDAL RIASLSGVKV 360
  361 KIMIPNKPDH MFVYWATYSY IGEMLKTGAE IYIYDNGFIH AKTIVVDEKI SSVGTANIDV 420
  421 RSFRLNFEVN AFIYDKEVSG QLAGKFRDDI ELSSLMDAER YSKRSFYIRL KESISRLLSP 480
  481 IL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	25	0.96
Cytoplasmic	26	32	0.78
Transmembrane Helix	33	55	0.93
Non-Cytoplasmic	56	482	0.85