YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023303, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.92
Transmembrane Helix	15	34	0.95
Cytoplasmic	35	67	0.86
Transmembrane Helix	68	91	0.85
Non-Cytoplasmic	92	99	0.77
Transmembrane Helix	100	123	0.90
Cytoplasmic	124	146	0.94
Transmembrane Helix	147	167	0.90
Non-Cytoplasmic	168	184	0.86
Transmembrane Helix	185	203	0.96
Cytoplasmic	204	212	0.77
Transmembrane Helix	213	235	0.85
Non-Cytoplasmic	236	246	0.78
Transmembrane Helix	247	266	0.81
Cytoplasmic	267	301	0.87
Transmembrane Helix	302	324	0.86
Non-Cytoplasmic	325	345	0.91
Transmembrane Helix	346	369	0.88
Cytoplasmic	370	383	0.94
Transmembrane Helix	384	405	0.93
Non-Cytoplasmic	406	411	0.83
Transmembrane Helix	412	434	0.91
Cytoplasmic	435	478	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETFSRFLG MTNNILWTYI LLAMLIGLGL YFSFRLKFVQ ISHFGEMIRL VSNGFSGKTK  60
   61 KKGSISAFQA FCLSAAARIG IGNLAGVALA ISMGGPGAVF WMWFIAIIGA ATSFVECTLA 120
  121 QIYKVKDGSR FRGGPAYYME RGLKKRWMGV WFSLLITVTY GLIFNSVQAN TVTLAFKNAF 180
  181 GVERYVIGII LAVLVAIIIF GGIKSIARIS ETIVPPMAIV YIGVAVFVVI KNYYVLPDVF 240
  241 SEIFKGAFGL EQAIGGGIGA AMKYGIQRGL FATEAGMGSS PNAAATSDVS HPAKQGFIQA 300
  301 LGVFVDTFLV CTSTAFIVLC SGAYKATNLE GIELTQNALS SQIGPWASSF LAIIIFLFAF 360
  361 SSLLGNYYYG ETNIAFIKES KLWLLIYRIA VVGMILFGSV ATLQTVWNMA DLFMGLMVFT 420
  421 NLIAITLLSK FVYATLADYI KQRKAGKDPI FRASSIPNLK NTECWEDTHL EKDRQAVS