YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023855, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	35	0.93
Non-Cytoplasmic	36	40	0.81
Transmembrane Helix	41	61	0.87
Cytoplasmic	62	65	0.84
Transmembrane Helix	66	87	0.92
Non-Cytoplasmic	88	94	0.78
Transmembrane Helix	95	114	0.95
Cytoplasmic	115	120	0.84
Transmembrane Helix	121	142	0.91
Non-Cytoplasmic	143	158	0.80
Transmembrane Helix	159	177	0.93
Cytoplasmic	178	185	0.79
Transmembrane Helix	186	206	0.93
Non-Cytoplasmic	207	226	0.89
Transmembrane Helix	227	251	0.87
Cytoplasmic	252	306	0.71
Transmembrane Helix	307	328	0.90
Non-Cytoplasmic	329	335	0.48
Transmembrane Helix	336	356	0.90
Cytoplasmic	357	366	0.56
Transmembrane Helix	367	388	0.93
Non-Cytoplasmic	389	395	0.59
Transmembrane Helix	396	419	0.81
Cytoplasmic	420	440	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHPFKIAS LGMQHMLAMY AGAIIVPLIV GGGLGLSQKE LTYLVSIDLL MCGVATILQA  60
   61 LSNRFFGIGL PVVLGCTFTA VGPMIAIGKQ YGVSSIYGAI IAAGLFVVIF AKLFGKLVKL 120
  121 FPPVVTGSVV TVIGVTLVPA AINDMAGGAG SKDFGSLENL ALAFGVLLFI VIMYRFFDGF 180
  181 IRSISILLGL LFGTIMAALM GKVSLQAVWE ADWFHGIQPF YFGTPTFAFT PMITMILVAC 240
  241 VGIVEATGVY FALSDICNKK IGEKDLTKGY RAEGLAMILG GIFNAFPYTT YSQNVGLVQL 300
  301 TGVRNRIIIY VCGGMLIVLG FIPKIAAITT IIPKPVLGGA MLAMFGMVMA YGIKMLSNVD 360
  361 FGKQENLLIV ACSVGIGLGV TVVPTLFSQF PESIRILTDN GIVLGSASAV ILNIVFHMIP 420
  421 ERRAKTKEEQ VSMKSAVTEM