YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152977432, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.84
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	39	0.79
Transmembrane Helix	40	60	0.91
Non-Cytoplasmic	61	73	0.68
Transmembrane Helix	74	95	0.88
Cytoplasmic	96	113	0.80
Transmembrane Helix	114	133	0.83
Non-Cytoplasmic	134	134	0.42
Transmembrane Helix	135	162	0.73
Cytoplasmic	163	165	0.47
Transmembrane Helix	166	186	0.82
Non-Cytoplasmic	187	193	0.83
Transmembrane Helix	194	214	0.90
Cytoplasmic	215	223	0.71
Transmembrane Helix	224	245	0.89
Non-Cytoplasmic	246	251	0.70
Transmembrane Helix	252	269	0.88
Cytoplasmic	270	300	0.97
Transmembrane Helix	301	322	0.85
Non-Cytoplasmic	323	369	0.93
Transmembrane Helix	370	389	0.95
Cytoplasmic	390	408	0.87
Transmembrane Helix	409	429	0.88
Non-Cytoplasmic	430	434	0.65
Transmembrane Helix	435	457	0.80
Cytoplasmic	458	528	0.79
Transmembrane Helix	529	548	0.92
Non-Cytoplasmic	549	553	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTWTQVYDP FGNIWISAAV ALIPIIFFFL ALAVFRMKGY VAGFITVVLT ILVALFVYKM  60
   61 PFTMAMAATG YGFLYGLWPI AWIIIMSVFL YKISVKTGQF DIIRASVLSI TNDHRLLVIL 120
  121 IGFSFGAFLE GAAGFGAPVA ITAALLAGLG LNPLYAAGLC LIANTAPVAF GAMGIPITVA 180
  181 GQVTGIDPHK IGQMAGHQLP FLSLFVPFFI VFLMDGFKGI KQTWPALFVA GGSFAITQFI 240
  241 TATFLGPELP DITSALVSLV SLSLFLKVWQ PKEVYQSNQA NVEAAATAEA SSMPNLTGKK 300
  301 VVKAWSPFII LTAMVVIWSQ DFFKALFAPG GALESFVMKF EIPGLHNLVM KAEPIVNKPT 360
  361 PYEAVLKFDI VSATGTAILI ACIISIFVLK MSAKQAVETL KETLQELKMP ILSIGFVLGF 420
  421 AFIANYSGLS STLALALAGT GGLFPFFSPF LGWIGVFLTG SDTSANALFS NLQSITAQQV 480
  481 GVKEVLLVAA NTTGGVTGKM ISPQSIAIAC AAVGLAGKES DLFRFTVKHS LFFVIIVGIM 540
  541 TYVQAYYLTW MIP