YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152976110, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	300	0.63
Transmembrane Helix	301	321	0.92
Cytoplasmic	322	333	0.58
Transmembrane Helix	334	358	0.81
Non-Cytoplasmic	359	370	0.58
Transmembrane Helix	371	396	0.82
Cytoplasmic	397	413	0.57
Transmembrane Helix	414	433	0.92
Non-Cytoplasmic	434	446	0.55
Transmembrane Helix	447	473	0.76
Cytoplasmic	474	477	0.41
Transmembrane Helix	478	492	0.32
Non-Cytoplasmic	493	493	0.30
Transmembrane Helix	494	516	0.78
Cytoplasmic	517	553	0.55
Transmembrane Helix	554	576	0.88
Non-Cytoplasmic	577	592	0.78
Transmembrane Helix	593	613	0.95
Cytoplasmic	614	618	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKKD TIIMDLTASD KEAVIDELVE RLEKAGRLNS QAEFKEAILK REAQSTTGIG  60
   61 EGIAIPHAKT KAVKEPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSCL 120
  121 STLLMDEEFR KQLLEATSQE ELLRLFDEKE NEKEEHVENV KLKKDEPYVL AVTACPTGIA 180
  181 HTYMAADSLK AKAAELGIAI KVETNGSTGV KNALTKEDIE RATAIIVAAD KQVEMNRFTG 240
  241 KYVIQVPVAD GIRKSEQLIQ RAIKQDAPVF QGVKDSRNAE KTEEEQGFGI YKHLMNGVSN 300
  301 MLPFVVGGGI LIALAFSFGG IKAEGPIAEM LMSIGGGKTG AFLFLVPILA GFIASSIADR 360
  361 PGFMPGIVGG FLAAQANAGF LGGLIAGFLA GYVVLGLKKA FANLPVQLEG IKPVLLYPVF 420
  421 GLLITGILMT KVVNPPVVAL NEVLTNWLNS LGGTNAILLG LILGGMMAID MGGPINKAAF 480
  481 TFGIAAIEAG NSGIHSAVMA GGMVPPLAIA LATTIFKAKY TEAERKSGLT NYIMGASFIT 540
  541 EGAIPFAAAD PIRVIVSCVV GSSMAGALSM LFHITLPAPH GGLFVIMLVN KPLLYILSIA 600
  601 IGSMISALMM GIWKKKIQ