YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89149709, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQSINPTKR LSGSKQRKTA LMLSIIPGMG QLYNKQYVKA LIFFVLAGSF VIAFADLLNM  60
   61 GLWGIVTLGT EVPRDHSIFL LVEGILALIV IIFGLGIYAF NLYDAYQNGK KRDIGIPLNS 120
  121 VKEQYHNLLD QGFPYLMVSP GFLLLIFVVV FPIIFVFLIG FTNYDLYHSP PAKLVDWVGF 180
  181 KNFVDIFTLP MWRDTFLSVF AWTVIWTFVA TTLQVALGIF LAILVNQPGI KGKALIRTIF 240
  241 ILPWAVPAFV SILVFAGMFN ESFGAINNQV LALFGIEKIA WMTDPFWSKV ALIMIQTWLG 300
  301 FPFIFAMTTG ILQSIPGELY EAATVDGATI WQQFRKITLP LVLYATAPIL ITQYTFNFNN 360
  361 FSIIYLFNGG GPAVSGQNAG GTDILISWIY KLTMTSAQYG KAAALTMILS FIVISVALWQ 420
  421 FKRTKSFQEE DMM

Type	Start	End	Confidence
Cytoplasmic	1	39	0.81
Transmembrane Helix	40	60	0.90
Non-Cytoplasmic	61	77	0.67
Transmembrane Helix	78	102	0.88
Cytoplasmic	103	140	0.70
Transmembrane Helix	141	161	0.93
Non-Cytoplasmic	162	201	0.75
Transmembrane Helix	202	225	0.91
Cytoplasmic	226	234	0.90
Transmembrane Helix	235	259	0.85
Non-Cytoplasmic	260	289	0.87
Transmembrane Helix	290	312	0.86
Cytoplasmic	313	336	0.80
Transmembrane Helix	337	356	0.86
Non-Cytoplasmic	357	398	0.68
Transmembrane Helix	399	421	0.88
Cytoplasmic	422	433	0.70