YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89149241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRGFFYVNF TSVRKLILFT VSTLLATFFL IGVVVTLLKE TKSTYLYNWL NELSMNGYMY  60
   61 VIGKENHYFT QEYRNLNPDF SISSFLFSVA TNIRFDDVRS FVGRELPGFG KYDTEIVIAG 120
  121 EGTNYSNLPI ESSVPLEEVV KERTGEAGQV QKKDSNVEKK QPDQTTGERK VAFIYHTHSW 180
  181 ESFLPLLNLT NDPNPNKATS SVTNISILGE RLREQLENEG IGAIEDKTDV GKRLISKGLN 240
  241 SNSSYKESRE IVQEAMARNK ELQYFFDLHR DSARKNVTTK VIGDKSYAKL AFVIGKGNKN 300
  301 YAKNLQLATA LHEAINQKYP GVSRGVIQKG FQTGNGVYNQ DLSGQALLIE VGGVDNTADE 360
  361 LNRSIDALAK AFSEYFWQAE KVNG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.74
Transmembrane Helix	16	38	0.79
Non-Cytoplasmic	39	384	0.91