YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152023716, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	42	0.78
Transmembrane Helix	43	64	0.91
Cytoplasmic	65	75	0.81
Transmembrane Helix	76	98	0.88
Non-Cytoplasmic	99	119	0.91
Transmembrane Helix	120	141	0.92
Cytoplasmic	142	149	0.94
Transmembrane Helix	150	172	0.89
Non-Cytoplasmic	173	196	0.91
Transmembrane Helix	197	216	0.94
Cytoplasmic	217	233	0.81
Transmembrane Helix	234	255	0.87
Non-Cytoplasmic	256	281	0.87
Transmembrane Helix	282	304	0.90
Cytoplasmic	305	318	0.79
Transmembrane Helix	319	337	0.90
Non-Cytoplasmic	338	340	0.52
Transmembrane Helix	341	363	0.85
Cytoplasmic	364	371	0.70
Transmembrane Helix	372	390	0.92
Non-Cytoplasmic	391	408	0.88
Transmembrane Helix	409	431	0.87
Cytoplasmic	432	451	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVSRKHVF FTGLMLFSLF FGAGNLIFPP MLGQNAGDHF WPAMVGFLLT GVGLPLLTVI  60
   61 AISLSGNGMQ QLASHVHPIF GIFFAVIVYI SIGPAMGIPR VANVAYEMGI SSFLPEDIRT 120
  121 SSLTLFVYTV VFFSLVYWLS LNPSKLVDRI GNILTPVLLF SIFLLFVKSV FTPLGPSGPA 180
  181 MQDYVTSPTF KGFMEGYLTM DTISALAFGI IVVNAIRSKG VEDRKTVAIA TTKAGLVAAI 240
  241 GLILVYVALG WLGVTSVSLG YAKNGGQLLT VIVQQLFGPY GLSLLAIIVT LACLTTCVGL 300
  301 VSACSQYFST LLVKFSYKNF ARGICVAGLL VANLGLTKII AISIPILLVV YPIAIVLVLL 360
  361 SLLHKFFGGY RSVYVGTLVG AGVVSVFDGL KQGNVSVSFI TSYFEWIPLY TEGIGWLLPS 420
  421 CLGAIIGLIV AKQKNAKLVP SVENTSESKV S