YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89157899, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	56	0.93
Transmembrane Helix	57	79	0.88
Cytoplasmic	80	105	0.95
Transmembrane Helix	106	131	0.84
Non-Cytoplasmic	132	151	0.88
Transmembrane Helix	152	176	0.84
Cytoplasmic	177	196	0.94
Transmembrane Helix	197	217	0.93
Non-Cytoplasmic	218	229	0.77
Transmembrane Helix	230	254	0.90
Cytoplasmic	255	287	0.96
Transmembrane Helix	288	310	0.90
Non-Cytoplasmic	311	526	0.98
Transmembrane Helix	527	552	0.84
Cytoplasmic	553	585	0.94
Transmembrane Helix	586	604	0.95
Non-Cytoplasmic	605	615	0.76
Transmembrane Helix	616	638	0.91
Cytoplasmic	639	649	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSSIALRN IQRNFKDYFV YFASMIFSIV IYFTFKALQY NSQMEKAAEA SKKISGAFQV  60
   61 SSVMLIIFVA VFIIYSNGFF TRKRKKEVGL YSLLGIRKRQ IGKMLFYENM LMGLMSLIIG 120
  121 IAIGSVLSKL FLELLVSMMG LNLNVHFEVP MAAIVDTAII FFVIILYTSL QGYRLIYRFK 180
  181 LIELFRAERE GEAMPKGSVI MALISVFLIG SGYFLALMFM KAVMYANFMA VALYILLATV 240
  241 LGTYLLFMFF TVFVLKRARN NKSSFYNGMN MVTTSQLLYR IKGNAKSLAT ISILSAVTLT 300
  301 AVGTSVTMYY NTFTQSKAVA PYSYSYEKKD AELDKKVNAI FAEEKENHPV KDQFEVEMVP 360
  361 VKGKFEGAKV DFIFNMNYSI SEKYQFISQT EFNKLAKKID AETVNVATGE AFIYDSSYIE 420
  421 GYEFSPEYKG NKAVFQIGNE TKTLTIQGAN NNAITNLGEL VVVVPDEMYE QAKQAFGTRV 480
  481 VKNIDVKDER NSKVLTEKLT KVMPAGESEM TPTFRDFYTG FHMGLEATGL MMFIGMFLGL 540
  541 VFLLATGSII YFKQLTEASA DRERYVVLHK IGVTKQEMKK AIAKQVSFIF AIPLVIGILH 600
  601 SLFALKGLGN ILPFEIMIPL LISIGVYSVI YIGYYFLTVR SYYKIVSAK