YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89204355, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMNVETNSS PTAPKPSKQT GWRIWWSLLR PHTLTAAFVP VFIGTAFAMQ VGGINQIHLP  60
   61 LFFMMLLACL LIQAATNMFN EYFDYKRGLD HEGSVGIGGA IVRDGIKPKT VLNLAFGFLG 120
  121 IATLLGVYIC MNSSWWLAAI GLVCMAVAYL YTGGPIPIAY TPFGELTAGL FMGVIIIGIS 180
  181 FFIQTGAVTS EVILLSIPSS ILIGAILLSN NIRDLDGDKE NGRKTLAILV GRERAVGVLA 240
  241 SMFIVAYIWT IALIIVNIVS PWMLIVFLSV PKAFKATKGF IGKSIPMEMV PAMISTAKTN 300
  301 TIFGLLMGIG LLLGYFL

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	49	0.88
Non-Cytoplasmic	50	56	0.73
Transmembrane Helix	57	79	0.88
Cytoplasmic	80	109	0.96
Transmembrane Helix	110	129	0.95
Non-Cytoplasmic	130	134	0.77
Transmembrane Helix	135	154	0.91
Cytoplasmic	155	165	0.65
Transmembrane Helix	166	185	0.92
Non-Cytoplasmic	186	191	0.72
Transmembrane Helix	192	212	0.87
Cytoplasmic	213	234	0.79
Transmembrane Helix	235	266	0.77
Non-Cytoplasmic	267	293	0.45
Transmembrane Helix	294	316	0.88
Cytoplasmic	317	317	0.47