YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89204399, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVKFGPML LALALFAVFL LIPTRFLLPL LSDEKVEQAA TSLKEEKIQS MILQQKMLAD  60
   61 PKYLPMYGSS EFARMDAFHP SNYFKVKPEG FTPFLLGRGG TQDLVHVLNF TSTMDQLKDK 120
  121 KMIFVLSPQW FVPQGIDETH FAPNFSKQQG YHFIFNDDLK PEMKKQIAKR LLNFEIVKKE 180
  181 TLLKISLEGI AYDDTKYKVK ALAAKPFAYI YRNILDRKDL FTVMFNIKPH KEQLDPSLKQ 240
  241 MNWEEARKHA DQTGAVESSS NEYGIEDDYF NSKIKKKLKQ REGYLKNDAY DQSPEYEDLQ 300
  301 IVLDLLKQSG AKPLFISVPV KGPWYDYAGF PKEKRELYYN KVHEQIKQAG YPIADFSNHE 360
  361 YDKYFLKDHM HLGWKGWVYI DEAIQQFYKA N

Type	Start	End	Confidence
Signal Peptide	1	32	0.93
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	391	0.99