YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228750393, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.99
Transmembrane Helix	25	47	0.90
Non-Cytoplasmic	48	83	0.93
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	114	0.92
Transmembrane Helix	115	139	0.86
Non-Cytoplasmic	140	165	0.83
Transmembrane Helix	166	186	0.80
Cytoplasmic	187	213	0.80
Transmembrane Helix	214	233	0.86
Non-Cytoplasmic	234	262	0.90
Transmembrane Helix	263	282	0.93
Cytoplasmic	283	311	0.94
Transmembrane Helix	312	336	0.92
Non-Cytoplasmic	337	367	0.93
Transmembrane Helix	368	389	0.93
Cytoplasmic	390	400	0.96
Transmembrane Helix	401	425	0.90
Non-Cytoplasmic	426	443	0.92
Transmembrane Helix	444	466	0.89
Cytoplasmic	467	508	0.86
Transmembrane Helix	509	529	0.78
Non-Cytoplasmic	530	546	0.92
Transmembrane Helix	547	568	0.93
Cytoplasmic	569	585	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMLENFKAE STKKKIKRRI GKEEWIQRLL IIGMLLSFFI MLVLPLLQLF TQAFYDKDGA  60
   61 FVGVANFSKY FTTPTLVQSL QNTIWISGAT TIISVTLAFA YAYAIARTNV FGKRVFQYIA 120
  121 LLPLFAPTMM HGIALTYLFG NQGLITKGMF GLFEGIQIPL YGPVGIVMAE VMYTFPQAFL 180
  181 ILLIALQGSD YRLYEASNML GASKVKQFFT VTLPSVKYGL ISAMFVVFTL SFTDFGAPKI 240
  241 VGGQYNVLAT DVYKQVIGQQ NMSMGATVGM ILLIPAIFAF AVDRITQRKQ ANLLSSKAVP 300
  301 YRIINNKKRD VISFVYCSIV TFMIILLFVA VGIAASVKVW PYNMSFTLEH FNFSSLTGDG 360
  361 IEAFKNSVIV SAITAVIGAI LTFVFAYAIE KIEQLQFFRK VGYFFSIVPL AIPGLVLGLG 420
  421 YVFFFSQPTI QILGLSVTNP FHSLYGTIAV LVLVNIIHFY SVTFVTATTA LKKLDREFEL 480
  481 VSQSMSVPFY KTFFRVTVPM CLPAILEMVM YYFVNSMVTV SAVVFLYAAD FKLAAVSIVN 540
  541 MDDAGNVAPA AAMSVLIVVT NIVVRVVYEW GTKALRNRTS QWQKR