YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163865090, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.88
Transmembrane Helix	31	51	0.92
Non-Cytoplasmic	52	71	0.86
Transmembrane Helix	72	93	0.90
Cytoplasmic	94	98	0.79
Transmembrane Helix	99	121	0.86
Non-Cytoplasmic	122	130	0.83
Transmembrane Helix	131	155	0.85
Cytoplasmic	156	170	0.89
Transmembrane Helix	171	195	0.85
Non-Cytoplasmic	196	215	0.81
Transmembrane Helix	216	239	0.85
Cytoplasmic	240	283	0.72
Transmembrane Helix	284	305	0.92
Non-Cytoplasmic	306	329	0.61
Transmembrane Helix	330	360	0.72
Cytoplasmic	361	363	0.46
Transmembrane Helix	364	386	0.60
Non-Cytoplasmic	387	391	0.57
Transmembrane Helix	392	413	0.84
Cytoplasmic	414	435	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFIAFMEK YIVPVAGKIG SQRHLAAIRD GFIAVMPLIL VGALASLING FPSEAFQEFM  60
   61 KGLFGETWKQ VGGGMWTGSF AILALIIAFT TSYNLAKSYG VDGLSAGIIS FGALIILTPT 120
  121 TPKEGGLNLA WTGAQGLFVA IIVALLVTEV FRFFVQRNIT FKMPDGVPPA VLRSFAAIVP 180
  181 AFVILTAVAG IQLAVKLAGT SVHEFIFNTI QSPLQSLAGT LPSAIVIVLL VHLLWFFGLH 240
  241 GPNIVGGIIE PLYLPALEKN MKLFQGGTSA FDVPNIITKP FFDTFVYLGG SGATLAFLVV 300
  301 VLLVAKSAQL RGVSRLSIGP GAFNINEPVI FGTPIILNPI LFLPFILTPI VLVITSYTAL 360
  361 SIGWVPKTVV MIPWATPPII SGYLVTGGHL SGAILQLFNF VIAMVIYYPF VVLSDRSVVR 420
  421 TEKAAAQGNN NSVPM