YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89156189, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	37	0.85
Non-Cytoplasmic	38	47	0.92
Transmembrane Helix	48	69	0.93
Cytoplasmic	70	77	0.88
Transmembrane Helix	78	97	0.95
Non-Cytoplasmic	98	103	0.62
Transmembrane Helix	104	125	0.87
Cytoplasmic	126	135	0.86
Transmembrane Helix	136	159	0.87
Non-Cytoplasmic	160	163	0.80
Transmembrane Helix	164	183	0.89
Cytoplasmic	184	215	0.95
Transmembrane Helix	216	237	0.89
Non-Cytoplasmic	238	251	0.81
Transmembrane Helix	252	273	0.89
Cytoplasmic	274	279	0.90
Transmembrane Helix	280	298	0.95
Non-Cytoplasmic	299	303	0.80
Transmembrane Helix	304	326	0.91
Cytoplasmic	327	338	0.83
Transmembrane Helix	339	363	0.81
Non-Cytoplasmic	364	368	0.76
Transmembrane Helix	369	390	0.94
Cytoplasmic	391	399	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVKEISKR KLLGIAGLGW LFDAMDVGML SFVIVALQKD WGLSTQEMGW IGSVNSIGMA  60
   61 VGALLFGILS DKIGRKSVFI ITLLLFSIGS GLTALTTTFA MFLVLRFLIG MGLGGELPVA 120
  121 STLVSESVEA HERGKIVVLL ESFWAGGWLI AALISYFVIP KYGWEVAMVL SAVPALYALY 180
  181 LRWNLPDSPR FQKVAKRPSV IENIKSVWSV EYRKATIMLW ILWFCVVFSY YGMFLWLPSV 240
  241 MVLKGFSLIK SFQYVLIMTL AQLPGYFTAA WFIERLGRKF VLVTYLIGTA CSAYVFGIAD 300
  301 SLTALIVAGM LLSFFNLGAW GALYAYTPEQ YPTTIRGTGA GMAAAFGRIG GILGPLLVGY 360
  361 LVASQASLSL IFTIFCGSIL IGALAVVILG QETKQRELV