YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229131581, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.77
Transmembrane Helix	11	30	0.90
Cytoplasmic	31	65	0.72
Transmembrane Helix	66	86	0.72
Non-Cytoplasmic	87	91	0.59
Transmembrane Helix	92	115	0.79
Cytoplasmic	116	135	0.93
Transmembrane Helix	136	158	0.89
Non-Cytoplasmic	159	170	0.84
Transmembrane Helix	171	194	0.89
Cytoplasmic	195	203	0.74
Transmembrane Helix	204	225	0.92
Non-Cytoplasmic	226	233	0.85
Transmembrane Helix	234	258	0.84
Cytoplasmic	259	294	0.92
Transmembrane Helix	295	316	0.90
Non-Cytoplasmic	317	354	0.93
Transmembrane Helix	355	376	0.91
Cytoplasmic	377	392	0.89
Transmembrane Helix	393	409	0.95
Non-Cytoplasmic	410	415	0.65
Transmembrane Helix	416	437	0.86
Cytoplasmic	438	486	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIVSWINN IVWSPALVYL CLGVGLYFSI RTRFLQVRHV GEMVKLTFKG EKSDAGVSSF  60
   61 QALALSLSGR VGTGNIAGVA TAVAFGGPGA VFWMWAVAFL GAGSAYVEST LAQIYKTKHQ 120
  121 GQFRGGPAYY IEKGLGVKWY ALVFVAATIL ATGMLLPGVQ ANSIAVSLET AFGINTSVSG 180
  181 AVLVAALALI IFGGVKRIVN VAQVVVPFMA LGYILVACVI VGMNIEKLPD AFMLILKSAF 240
  241 ALEAAFGGII GLAISWGVKR GIYSNEAGQG TGAHAAAAAE VSHPAKQGLV QAFSVYIDTL 300
  301 FVCSATAFMM IITGMYNVFD ASGKNFIVNK LNGAQPGPGY TQAAVESVFP GFGNGFVAIS 360
  361 LLFFAFTTIM AYYYIAETNI AYLNRDKDRP WMSIVLKFVF LGVVFYGCVK TAETAWALGD 420
  421 IGVGIMAWVN IIAILLLQKP ALIALKDYEK QKKEGKDPVF DPQKLGIKNA DFWEHEYGKD 480
  481 KKEEVS