YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89206711, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	36	0.88
Non-Cytoplasmic	37	71	0.81
Transmembrane Helix	72	99	0.85
Cytoplasmic	100	136	0.81
Transmembrane Helix	137	161	0.82
Non-Cytoplasmic	162	180	0.77
Transmembrane Helix	181	204	0.91
Cytoplasmic	205	221	0.76
Transmembrane Helix	222	244	0.87
Non-Cytoplasmic	245	285	0.76
Transmembrane Helix	286	304	0.60
Cytoplasmic	305	313	0.76
Transmembrane Helix	314	332	0.87
Non-Cytoplasmic	333	338	0.74
Transmembrane Helix	339	358	0.92
Cytoplasmic	359	363	0.75
Transmembrane Helix	364	385	0.85
Non-Cytoplasmic	386	389	0.83
Transmembrane Helix	390	409	0.95
Cytoplasmic	410	687	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKIFGVLQ KVGKALMLPV AILPAAGILL GFGNAFQNPQ LTNVIPALKA DWFVMVAKIM  60
   61 EQSGDIIFAN LALLFAVGVA IGLAGGDGVA GLAAFVGYLI MNKTMSVFLE VDKLVKVTST 120
  121 GTDPVKIGFS DPAYANVLGI PTLQTGVFGG IIVGIVAAYC YNKYFNIELP SYLGFFAGKR 180
  181 FVPIATATFS LVVGIIMCFI WPYIQGGLNT FSHQMIDANR TIAAFIFGLI ERSLIPFGLH 240
  241 HIFYSPFWFE FGQYTNAAGE LIRGDQKIFM AQLKDGVELT AGTFTTGKYP FMMFRLPAAA 300
  301 LAMYHEARPE NKKLAAGILG SAALTSFLTG ITEPLEFSFL FVAPVLFGIH AVFAGLSFMT 360
  361 MQILGVKIGM TFSGGLIDFI LFGVLPGRTA WWWVIIVGLV LAVIYYFGFR FAIRKWNLKT 420
  421 PGREVANANE GAGKTEAGEL PREVLVALGG KENIASLDAC ITRLRVQVNE QKNVNKDRLK 480
  481 ELGAAGVLEV GNNIQAIFGP KSDTLKSQIH DIMSGRTPHV EKEAPVKVEE APQQVDENET 540
  541 IVSPIEGKIL PITEVPDQVF SGKMMGDGFA IEPTEGTVVS PVNGEIVNVF PTKHAIGIQS 600
  601 EGGKEILIHF GIDTVKLNGE GFEALVAQGD KVKQGQPLLK VDLAFVKENA PSIITPIVFT 660
  661 NLQQGQQVEL KKDGNVKKGE NAIIDIQ