YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89207074, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNILLRFSI IILIFLSGCT QPNIVDTQRI IHVGGFDITK EKKFRGTILY PDYTKGVQSK  60
   61 PETQSTTAGT IETISSLLNA KSPHTIAVGQ MRVVLFGKSF GERGIGDIIN NLQRDPNIGR 120
  121 DVQLALVDGS TEELLKHVKT NGSLYLSDLL EQNIETETIP RMALNIFLYN FYSSGCDPFL 180
  181 PYIQVAEDKS ASIKGLAFLK KDKVAMYTDK TGSFLFKLLI NPTNNGRYEV SIRQGKHKGL 240
  241 IATQNLSGNS VCSLSDAGDI PKVHIRLKLN GLIKNAPDWL DLSKSENVTY VKKHVEKTLE 300
  301 KHLNELIKQF QEQEIDPIGI REEIRSHSRK WSMKQIQEMY PSVDVAVNVK INVVQSGIGE 360
  361

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	360	0.99