YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163862954, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.89
Transmembrane Helix	37	56	0.82
Non-Cytoplasmic	57	64	0.77
Transmembrane Helix	65	87	0.88
Cytoplasmic	88	96	0.87
Transmembrane Helix	97	116	0.96
Non-Cytoplasmic	117	127	0.67
Transmembrane Helix	128	152	0.77
Cytoplasmic	153	167	0.85
Transmembrane Helix	168	190	0.89
Non-Cytoplasmic	191	197	0.87
Transmembrane Helix	198	217	0.94
Cytoplasmic	218	255	0.96
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	290	0.88
Transmembrane Helix	291	311	0.94
Cytoplasmic	312	321	0.88
Transmembrane Helix	322	341	0.94
Non-Cytoplasmic	342	347	0.62
Transmembrane Helix	348	371	0.82
Cytoplasmic	372	385	0.76
Transmembrane Helix	386	409	0.90
Non-Cytoplasmic	410	416	0.82
Transmembrane Helix	417	437	0.95
Cytoplasmic	438	483	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNNDLNFE PQDVNIVNSK QAKKAVIATG IGNAMEWFDF GLYAYLAVIL SQLFFSGVDN  60
   61 SGLQLVLTFG TFAAAFLVRP IGGIFFGRIG DKYGRKIVLS TTIILMALST LFIALLPTYE 120
  121 QIGVWAPILL LIARMIQGFS TGGEYSGAMV YIAESSPDKK RGILGSGLEI GTLSGYIAAS 180
  181 VIVTILTLLL TDEQMLSWGW RIPFLIAAPI GLVGLYLRRH LDESPIFQEM EKAQEESEDN 240
  241 EQFSFMDILK YHKKDFLLST VIVAFFNITN YMILSYIPSY LTQVLKVKET TGLLIISITM 300
  301 ALMIPLALYF GKLSDKVGNK RVVQIGLLGL ALCSIPAFLL IGNGHIVAMF AGIFILGFFL 360
  361 SVYEGTLPSL LPALFFTDVR YRALSISFNI SVSIFGGTTP LVCSYLVHAT GNPLAPAFYL 420
  421 TGVSVIGLIV FSVLFVTTSG RALKGSYPTV ESKKEAHQIA KEDPEETLWW HEESLEIEAG 480
  481 KKA