YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89154354, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	152	0.99
Transmembrane Helix	153	173	0.93
Cytoplasmic	174	186	0.89
Transmembrane Helix	187	207	0.93
Non-Cytoplasmic	208	232	0.94
Transmembrane Helix	233	255	0.90
Cytoplasmic	256	262	0.91
Transmembrane Helix	263	282	0.92
Non-Cytoplasmic	283	299	0.83
Transmembrane Helix	300	320	0.95
Cytoplasmic	321	339	0.91
Transmembrane Helix	340	360	0.94
Non-Cytoplasmic	361	373	0.77
Transmembrane Helix	374	394	0.95
Cytoplasmic	395	405	0.91
Transmembrane Helix	406	426	0.90
Non-Cytoplasmic	427	547	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIRRLGAW LLIACVFIIL IPKSASAHAY VVKSNPAENE TLKKAPSVVK IEFDEDIQVS  60
   61 SFNTLFVRDT SGKRVDLKDA HIDKKNKKIL EAGLKENLKN GLYSIQWKAI SADGHPIQGV 120
  121 IPFRIGLAEA GTDDIQVEEM GYVPQIDMIM ERGVLYTSFS LFLGVLFFNL IMYKGNATSV 180
  181 QSRSKRIIWI SLFGIFISLL FNLPLQAKIN ADVSWLEAFD PLLLKETLQL SVFGYVWITQ 240
  241 MALISTLIIV TYFAVKSERL SSFKVWSIPI VLFMGLLVMK AFNSHAYGLK FKEIAVVMDF 300
  301 LHLFAASLWI GGLSSIVLLL RKEDDKWTVY WDAIKRFSPW ATGAVIVILL TGLFNSTFFI 360
  361 PTIHSLFDTK YGLALLAKIL LFVCTGILGI IHYVKGRMRA QQRLGATVKV EFIIGIIVFV 420
  421 IVAFMTNVQT PPMPPTGPFT EGKQLDNGYE LTLHVSPNKV GQNTFHITLK DENGQPVTDM 480
  481 EQIVLTTQSL DMNMGKGSFK VSAVSPGEYE AEGMYINMTG NWNIQVHGLT KSLDSFDTDY 540
  541 KFIVGGR