YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228649068, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.76
Transmembrane Helix	30	52	0.76
Non-Cytoplasmic	53	62	0.71
Transmembrane Helix	63	86	0.86
Cytoplasmic	87	116	0.98
Transmembrane Helix	117	139	0.88
Non-Cytoplasmic	140	154	0.87
Transmembrane Helix	155	176	0.92
Cytoplasmic	177	183	0.71
Transmembrane Helix	184	204	0.89
Non-Cytoplasmic	205	225	0.91
Transmembrane Helix	226	248	0.88
Cytoplasmic	249	265	0.94
Transmembrane Helix	266	289	0.92
Non-Cytoplasmic	290	309	0.93
Transmembrane Helix	310	331	0.85
Cytoplasmic	332	360	0.85
Transmembrane Helix	361	381	0.96
Non-Cytoplasmic	382	389	0.78
Transmembrane Helix	390	410	0.94
Cytoplasmic	411	416	0.88
Transmembrane Helix	417	436	0.95
Non-Cytoplasmic	437	445	0.71
Transmembrane Helix	446	464	0.96
Cytoplasmic	465	487	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLAIYMAG MLYIGYWSYK KTSDLSDYML GGRGLGPAVT ALSAGASDMS GWMLMGLPGA  60
   61 MYATGLSSVW IAIGLLIGAY ANYLILAPRL RTYTEMANDS ITIPDFLENR FKDRTKILRF 120
  121 VSAIVILVFF TFYASAGLVS GGRLFENSFN LDYKIGLFVT VGVVVAYTLF GGFLAVSWTD 180
  181 FVQGCIMFIA LVLVPIVAFT DVGGVTETFN TIKQVDASHL DMFKGTTILG IISFLAWGLG 240
  241 YFGQPHIIVR FMAITSVKDL KTSRRIGIGW MTISIIGAML TGLIGIAYYA KNNEKLQDPE 300
  301 MVFVTFSNIL FHPYITGFLL SAILASIMSS ISSQLLVISS AVTEDFYKTF FRRNASDKEL 360
  361 VFIGRLSVLV VAMIAVVLAY HPSDTILTLV GYAWAGFGSA FGPAILLSLY WKRTNKWGVL 420
  421 AGMIVGAVVV ITWVQIPSLK ATMYEMVPGF FCSLLAVIVV SLLTKEPVKA IHREFNEMEA 480
  481 VLEEETK