YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89153420, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDERFKQA EFGAIVGIVG NIILAIVKAV IGYIGNSKAL LADAVHSGSD VIGSLAVLFG  60
   61 LRAAKQPPDE DHPYGHGKAE SISAIIVAVL LFIVGIEIAI SSIKAFSQDL EPPKGITIFA 120
  121 VILSIVVKEG MFQYKYRLGK RINSDAIIAN AYEHRSDVFS SIAALIGICA AIIGGKLGID 180
  181 WLVYADPIAG LFVSILVAKM AWSIGAQAIH ATLDHVLHEE DVVPLREAVF QVEGVKKIGS 240
  241 LYAREHGHYV IVDIKVSVDP YITVEEGHRI GKHVKEKLMK QDNVQNVFVH INPYSPN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.95
Non-Cytoplasmic	33	41	0.75
Transmembrane Helix	42	61	0.90
Cytoplasmic	62	81	0.86
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	114	0.78
Transmembrane Helix	115	132	0.92
Cytoplasmic	133	157	0.86
Transmembrane Helix	158	175	0.96
Non-Cytoplasmic	176	182	0.65
Transmembrane Helix	183	203	0.86
Cytoplasmic	204	297	0.96