YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89153322, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	35	0.93
Non-Cytoplasmic	36	46	0.80
Transmembrane Helix	47	71	0.90
Cytoplasmic	72	81	0.94
Transmembrane Helix	82	104	0.90
Non-Cytoplasmic	105	127	0.87
Transmembrane Helix	128	147	0.95
Cytoplasmic	148	154	0.95
Transmembrane Helix	155	177	0.91
Non-Cytoplasmic	178	202	0.88
Transmembrane Helix	203	222	0.93
Cytoplasmic	223	235	0.83
Transmembrane Helix	236	256	0.94
Non-Cytoplasmic	257	288	0.93
Transmembrane Helix	289	314	0.88
Cytoplasmic	315	324	0.77
Transmembrane Helix	325	343	0.94
Non-Cytoplasmic	344	349	0.60
Transmembrane Helix	350	370	0.90
Cytoplasmic	371	377	0.83
Transmembrane Helix	378	399	0.89
Non-Cytoplasmic	400	418	0.92
Transmembrane Helix	419	437	0.96
Cytoplasmic	438	450	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMKSMKGRL RPGDTVAIGL MLFALFLGAG NLIFPPVLGQ QAGENVWIAT IGFLVTGVGL  60
   61 PLLAVTAVAF VEGDLKALSS RVHPIFAFIF PLISYLAIGP FFAIPRTGAV SFEMGMKPFL 120
  121 SETMVSEWYM LFLFTIVFFG ITWYLSLNPS KLVDWFGKFL TPLLVLIVAV IVGKAIIDPI 180
  181 GEPAAPLAAY KENAFFGGFI QGYLTMDAIS ALVFGIVVVQ VIRSKGIKES GQIAKITVVS 240
  241 GVIAVLGLTL IYLSLAYLGS TSTSLGVSEN GGLILTNVVN ELYGTSGKIL LGLVIILACL 300
  301 TTSVGLTSAC AGFFTNLFPK LSHKTIVTMV CVFSLIVSNL GLTQLITVTL PVLMIIYPVA 360
  361 IVLIVLSYFH KWIGKRNTIY IGAILGALLI SFFNGLESAN IKIDAISNVL QMLPLYKEGI 420
  421 GWLIPSCIGG ILGFFFYKSN ELSELQKKGA