YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89341017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	80	0.92
Non-Cytoplasmic	81	96	0.77
Transmembrane Helix	97	117	0.90
Cytoplasmic	118	125	0.82
Transmembrane Helix	126	147	0.93
Non-Cytoplasmic	148	154	0.80
Transmembrane Helix	155	176	0.91
Cytoplasmic	177	185	0.81
Transmembrane Helix	186	206	0.94
Non-Cytoplasmic	207	213	0.86
Transmembrane Helix	214	237	0.89
Cytoplasmic	238	243	0.94
Transmembrane Helix	244	266	0.89
Non-Cytoplasmic	267	272	0.77
Transmembrane Helix	273	293	0.92
Cytoplasmic	294	308	0.84
Transmembrane Helix	309	334	0.86
Non-Cytoplasmic	335	351	0.90
Transmembrane Helix	352	372	0.93
Cytoplasmic	373	379	0.84
Transmembrane Helix	380	399	0.94
Non-Cytoplasmic	400	409	0.77
Transmembrane Helix	410	430	0.94
Cytoplasmic	431	445	0.80
Transmembrane Helix	446	466	0.90
Non-Cytoplasmic	467	511	0.93
Transmembrane Helix	512	533	0.92
Cytoplasmic	534	718	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSSNDLCR FHGSGKAGMA ASPATGPQAT QSSQSAIAAT ASTPPPPGEP APVSPNRRNV  60
   61 IFVAVVLGML LAALDQTIVA TALPTVVADL GGAGHQSWVV TSYLLASTIA TAIVGKLGDL 120
  121 FGRKMIFGVA ILFFLAGSVL CGIASTMEML VASRALQGIG GGALMVTATA LIGEVIPLRD 180
  181 RGRYQGALGA VFGVTTVIGP LLGGYFTDHL TWRWAFWINV PIGIVVLIVA LATIPALSRR 240
  241 GKPVIDYAGI VLIGLGASAL TLATSWGGST YAWSSPMIIG LFVGSAVALA VFVRVELRAT 300
  301 EPVLPIRLFA SPVFTVCCVL SFIVGFAMLG ALTFLPTFMQ FVDGVSATES GLRTLPMVGG 360
  361 LLLTSMGSGV LVSRTGRYKI FPVLGTAVMT VGFVLLSQMD ATTPVWQQSA YLFVLGTGIG 420
  421 MCMQVLVLIV QSTANFSDLG VATSGVTFFR TIGSSFGAAI FGSLFANFLD SRIGGALAAS 480
  481 GAPPEAAQSP QVLHRLPDAV AAPIVEAYSD SLGLVFLCAA PVAVIGFVVA LTLKQVPLRE 540
  541 IEATAALDMG EGFGMPSDDS SERMMETAVG RLVRHSPEIR LRSIAGTHGC DPDVALLWAL 600
  601 IQIYRQSQVF GSARLSEIAE RLRVPPEVLA PTFDRLVATG RALRTDDQLW LTQSGAQQVS 660
  661 AATAALVSRI VEKLEKSPTF EGRPDWDEVE KALERIAQRL LVQREWEDDR TELAAAGK