YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90196450, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.98
Transmembrane Helix	27	47	0.93
Non-Cytoplasmic	48	61	0.80
Transmembrane Helix	62	82	0.91
Cytoplasmic	83	91	0.79
Transmembrane Helix	92	114	0.91
Non-Cytoplasmic	115	121	0.80
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	152	0.81
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	180	0.86
Transmembrane Helix	181	203	0.91
Cytoplasmic	204	210	0.90
Transmembrane Helix	211	233	0.90
Non-Cytoplasmic	234	239	0.81
Transmembrane Helix	240	262	0.88
Cytoplasmic	263	275	0.89
Transmembrane Helix	276	301	0.86
Non-Cytoplasmic	302	318	0.89
Transmembrane Helix	319	339	0.92
Cytoplasmic	340	346	0.82
Transmembrane Helix	347	366	0.93
Non-Cytoplasmic	367	376	0.77
Transmembrane Helix	377	397	0.94
Cytoplasmic	398	412	0.76
Transmembrane Helix	413	436	0.82
Non-Cytoplasmic	437	478	0.90
Transmembrane Helix	479	500	0.88
Cytoplasmic	501	685	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPEAHPE TTQPAEPAPV SPNRRNLIFV AVVLGMLLAA LDQTIVATAL PTMVADLGGA  60
   61 GHQAWVVTSY LLASTIVTAV VGKLGDLFGR RTIFAAAVVF FLIGSVLCGI ASSMEMLVAS 120
  121 RALQGVGGGA LMVTAAALIG EVIPLRDRGR YQGALGAVFG VTTVVGPLLG GYFTDHLTWR 180
  181 WAFWINVPIG IVVLIVALTT IPALRRGGRP VIDYAGIVLI GLGASGLTLA TSWGGSTYPW 240
  241 SSPVIIGLFV GSGVALALFV RVELRAEEPV LPIRLFASPV FTVCCILSFI VGFAMLGALT 300
  301 FLPTFMQFVD GVSATESGLR TLPMVGGLLL TSMGSGVLVS RTGRYKIFPV AGTAVMVVGF 360
  361 VLLSQMDATT PMLQQSAYLF ILGTGIGMCM QVLILIVQST ATFSDLGVAT SGVTFFRTIG 420
  421 SSFGAAIFGS LFANFLDARI VTALAGGGAP PEAAQSPQVL HRLPDAVAAP IVEAYSDSLG 480
  481 LVFLYAAPVA LLGFLVALTL KQVPLQEFEA SAALDMGEGF GMPSTDTPEK MLETAVGRLV 540
  541 RQSPEIRLRS IAGTRGCESD VALLWALIQI YRQSQVFGSA RLTEMAERLR VPPEVLEPTF 600
  601 DRLVECGHAL RTGDQLWLTQ SGAQQVDAAS SALVGRIVAK LEASPAFEGR PDRGEVEAAL 660
  661 ERIALRLLVQ RDWDDDRAEL PTGGN