YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90409907, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.95
Non-Cytoplasmic	43	79	0.91
Transmembrane Helix	80	101	0.89
Cytoplasmic	102	108	0.87
Transmembrane Helix	109	131	0.91
Non-Cytoplasmic	132	136	0.80
Transmembrane Helix	137	156	0.94
Cytoplasmic	157	164	0.85
Transmembrane Helix	165	186	0.94
Non-Cytoplasmic	187	207	0.94
Transmembrane Helix	208	227	0.94
Cytoplasmic	228	247	0.86
Transmembrane Helix	248	267	0.89
Non-Cytoplasmic	268	270	0.69
Transmembrane Helix	271	289	0.90
Cytoplasmic	290	296	0.65
Transmembrane Helix	297	317	0.88
Non-Cytoplasmic	318	323	0.75
Transmembrane Helix	324	344	0.91
Cytoplasmic	345	366	0.86
Transmembrane Helix	367	387	0.92
Non-Cytoplasmic	388	413	0.78
Transmembrane Helix	414	434	0.87
Cytoplasmic	435	446	0.70
Transmembrane Helix	447	468	0.92
Non-Cytoplasmic	469	473	0.73
Transmembrane Helix	474	492	0.93
Cytoplasmic	493	501	0.68
Transmembrane Helix	502	522	0.88
Non-Cytoplasmic	523	541	0.72
Transmembrane Helix	542	565	0.85
Cytoplasmic	566	590	0.66
Transmembrane Helix	591	617	0.80
Non-Cytoplasmic	618	655	0.52
Transmembrane Helix	656	677	0.92
Cytoplasmic	678	680	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNVRLAVWG VIKNRSMLNW RVMCHSHAIV TLFLICLFVW LFHRSAPYSL SMAQWVNATL  60
   61 QPDPTDYQQI IIHYTYLPRI VMALICGAGL AMAGCVMQHV LRNPLASPTT LGVAAGAELG 120
  121 LVCGILFVPA ALGISNYWFA FSGGLVATGL VFVLTAKKGF APLQMVLSGM VVSLFFGALN 180
  181 MMLLLLNEEQ LNSVFIWGAG ALNQNDWQGV LQLLPLVVTP FIVLLLLQRP LSALQLGEEV 240
  241 AKSVGVKVAY LRLATLIIAV FMTSSIISQV GIIGFVGLVS PALATLSGVR HFFPRMLMSS 300
  301 LIGAMLLLGA DLLIQPLSGV GGELLPTGAI TALIGAPFLL WLLHRHSFIA SQKTEQEALL 360
  361 EYQLRSFRGV FIGMVIVSML VIYLALCVGN STNGWVFLNS SGSAQIDTVL ALRFPRVAVA 420
  421 MLAGVALALS GTVIQRMTGN PMASPEVMGI SAGAAFALVL GAMSGIAISR SEQMLLGVVG 480
  481 SMVVMGCIWL SGRNNNFAPT QMLLTGIALS AFLDAMIRIA LSTGQDNVKA LLSWLSGTTY 540
  541 LAGSNDAGLL LIGILSIGCL LLLWHRWLDI MALGSTVAES IGVNCRKVRQ LLMLAAASLT 600
  601 ALATMVVGPL SFVGLLAPHM AKSLGQYNAR HQLVIACLLG GNIMVFADWV GRNVWFPWQF 660
  661 PAGLLASIIG GGYFLYLLRK