YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90411293, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPITEWMTFV VAISILTITP GLDTVLVIRN TSRGGWKDGV TSSFGICSGL FVHATLSAVG  60
   61 ISFILVQSAW LFQTIKIIGA AYLIYLGVCS LRSGRKAGSL TVMPNQTNDN AFNIKRSFSE 120
  121 GFLSNVLNPK TAIFYLAFLP QFINPEGSAI TQSFILAGIH FILAMTWQSS LALVMERAKN 180
  181 WLAKPKTNQW LQSLTGCVMV GLGLQLLLSK NVRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	39	0.84
Transmembrane Helix	40	65	0.82
Non-Cytoplasmic	66	71	0.64
Transmembrane Helix	72	91	0.84
Cytoplasmic	92	121	0.87
Transmembrane Helix	122	143	0.63
Non-Cytoplasmic	144	148	0.69
Transmembrane Helix	149	171	0.83
Cytoplasmic	172	189	0.69
Transmembrane Helix	190	209	0.89
Non-Cytoplasmic	210	214	0.72