YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90411594, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKATLHI EGKAPIELPI LGGSQGPDVI DVRKLGANGY FTFDPGFLAT ASCESQITYI  60
   61 DGDKGILLHR GYPIDQLANN ADYLEVCYVL LYGEVPTRAQ YESFRTTVTR HTMVHEQIAS 120
  121 FFHGFRRDAH PMAVMCGVVG ALAAFYHDSL DINNDSHREI TAFRLLSKMP TLASMCYKYS 180
  181 IGQPFIFPRN DLNYAENFLH MMFATPCEEY EVSPVVARAM DKIFTLHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLKMLEEIG SVDKIEEYIE RAKDKEDPFR 300
  301 LMGFGHRVYK NYDPRATVMR EACHEVLEEL NIDDPLLDVA MELERIALSD PYFIDKKLYP 360
  361 NVDFYSGLIL KAIGIPVSMF TVIFAMSRTV GWIAHWSEMH SDPDNRIGRP RQLYTGELQR 420
  421 EFKPLHERE

Type	Start	End	Confidence
Non-Cytoplasmic	1	367	0.62
Transmembrane Helix	368	391	0.63
Cytoplasmic	392	429	0.53