YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90325217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGEALTP SGYITHHLTN LAVGDGGFWT VHIDSLFFSV LTGLIFLGLF HSVAKKATSG  60
   61 VPSKLQCFVE IMVEFVDNNV KDTFHGRNPL VAPLALTIFC WIMLMNIMDL VPIDFLPYAA 120
  121 EHGLGIPYLK VVPTADVNIT MAMALGVFAL MIYYSIKVKG LGGFAKELAL HPFNHPIMIP 180
  181 FNLLLEIVSL LAKPISLGMR LFGNMFAGEV VFILIAALMP WWAQWLGSVP WAIFHILVIT 240
  241 IQAFVFMMLT IVYLSQAHED NH

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.81
Transmembrane Helix	31	54	0.83
Cytoplasmic	55	89	0.88
Transmembrane Helix	90	113	0.81
Non-Cytoplasmic	114	133	0.79
Transmembrane Helix	134	156	0.86
Cytoplasmic	157	200	0.70
Transmembrane Helix	201	223	0.89
Non-Cytoplasmic	224	230	0.67
Transmembrane Helix	231	254	0.92
Cytoplasmic	255	262	0.71