YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90324686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKKTNNDN AATNNQAAGS KTTNKQGQSS AKAQAPQTST QREAAKAEAN KTASTVSSSA  60
   61 APKATEAKTE TNTTEKKATA KPATPPAEKK SGSKTGAIAI ALVIALGAGL YYHGHQQGLA 120
  121 QEAQITALQQ QIANITNQVQ TSQKETIGQV DQSLQRTQVV IEQQDKSISS LQLALSEMEG 180
  181 RRPNDWLLAE ADYLIKMAGR KLWLEHDVIS STTLLESADH RIAELNDPSL RNVRKAMSND 240
  241 ITSLKAVARI DRDGLVLRLT SLQEQVAILP LANAIIPEAE AVEENAVSTS VDDWQTNLKT 300
  301 SLKNFSEHFV TYRQRDGSVI PLLSPKQDFY LQENIKSKLE TAIRSVYREQ GEVYATSLTM 360
  361 AKEWAEQFYN LDDPATQSFI NTLDQLAKEN IEASYPDRLQ SQPIISDLIN ERLRGKVKPL 420
  421 SSEENPA

Type	Start	End	Confidence
Cytoplasmic	1	94	0.87
Transmembrane Helix	95	115	0.82
Non-Cytoplasmic	116	427	0.99