YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90414896, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELIFSLLQQ LSVYLVIAYL LSKTPLFMPL TTVSGRLSQR FSCYVLFSLF CILGTYFGLN  60
   61 IEDAIANTRA IGAVMGGLLG GPIVGFAVGL TGGMHRYSMG GFTDVACAIS TTAEGLLGGL 120
  121 LHSYYVRRGQ VDQLYRPFIV FTITLVAEII QMFIILIVAE PYDKALHLVS AIALPMVIAN 180
  181 SLGAALFMSI IQDRKTIYEK YSAAFSSRAL KIAQRSVGIL SQGFNEESTK EIAKIVYEET 240
  241 GVGAVAITDR DKILAFIGIG DDHHLPGTPI SSGYTRRSID NCELVYADGH DMPYCCSLSN 300
  301 RCKLGSALVI PLVGGNNDVL GTIKLYEPKR KLFSTVNLTL GEGIAKLLSN QILTGRYEQQ 360
  361 QILLTQAELR LLQAQVNPHF LFNALNTISA IIRRDPDKAR QLIQHLSQFF RRNLKQNIET 420
  421 VTISEELQHV RSYLEIELAR FSDRLNVEVI VPDELMSVNL PTFTLQPLVE NAIKHGTSSL 480
  481 LENGQIIIRG YVFDNHLVLE VEDNAGTYQP VSEESGLGMK IVDKRLKNMF GQQYGLKMSS 540
  541 QPNVWTRATI TLPEDKTLLH SDINKIHVEE NKQNSRNGEN TA

Type	Start	End	Confidence
Cytoplasmic	1	10	0.59
Transmembrane Helix	11	31	0.78
Non-Cytoplasmic	32	40	0.50
Transmembrane Helix	41	60	0.93
Cytoplasmic	61	69	0.57
Transmembrane Helix	70	93	0.89
Non-Cytoplasmic	94	101	0.55
Transmembrane Helix	102	126	0.79
Cytoplasmic	127	136	0.59
Transmembrane Helix	137	159	0.91
Non-Cytoplasmic	160	165	0.60
Transmembrane Helix	166	190	0.87
Cytoplasmic	191	582	0.60