YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|92089902, gi|...
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKDNKYELV TNLNNNNVNT QNTPVEESKV SQSATEQDAT IDLTFVDDDD NGKIVDYSEY  60
   61 LPSENGGHHY VYGKIGDKVS AKAYNNGKMS IQRMLDLLDV GYYEPAGAYQ APTEFTSPEM 120
  121 SFQIHLKHQT KQKKYAPITL IRNIHYRHTM ATDGKTMQDD QGKEVPDYKV QYQITPTVTF 180
  181 DLVTNKVKNG IFNVKNLTTG ETYTIASKNN RLVVDYFDPI MSPDVSQQWK PQAVETTESF 240
  241 DKLPDLDHWK SLANGSVFDN QSVVYKVDYT KIKIGDYVPN NQVYFNTADA EVSADGTHET 300
  301 VYRYFYYGMT DENDEGVNTD HVTKQHYGGR QALEFTRTKT VDTDGQVTYG KWTPVTTDTF 360
  361 PEYIYKDKYQ VKGYDGQYSH ASAVKYDPND PMHNGEIHGF DPYGPLYKVS IIDDVTGETL 420
  421 NTYEKNPVPE AGDDYQYTRD RAEKTRQSIY DQVDEYKSKG YTVASDDFGS ISINNTDNAN 480
  481 HSEGTDEDAK YVYTIHLTHK ATPHTDSKIA SRTIHYVANT KDGHELQDDT TQNVMLTSST 540
  541 YYTDALTGNR VNAKQDANGD WIVDTENATA LPAITWTVNA DKSTGLTTDD KNFAAITTPE 600
  601 TITLSSDEAT KRGTDDGDWY LVDTDSNGEV SYGDPTSDTW KTDTPNKVAD GYLIYKQKAQ 660
  661 YNIHYIDVNG VEGKTTYEPI DGTELKNHQV TGVGSEDKTY VGDTPDATQK LWSPADYEKA 720
  721 GYVLVGLSDN AKDDLLGKQT LTHGVQDQYV YLKHKAVEIT SKTPNPPKNS SVDPQDLSKS 780
  781 ADRIIHYVTE KDQTPLLDDT TQKITFEGTA YIDMVNGRNV QTVEGTDAFT GQKVLIALTK 840
  841 PGTITWTATA GDGSTVDNNK GSFNQVTKPV IADGKLAGTW TVTGATANNA KQDGTDLDPA 900
  901 SKDFDPHREV TLEYTKDVNA DIIYIDDTDN KVLISTAQDT DEHGKPGQDV HFAQDPQKTI 960
  961 ANFENQGYIL VRDDFGKGQK YGETDSHYEI HFVHGVNKTV EHKSAVRIIH YVTDDGDQVL1020
 1021 LDPTTQDQVS FTKTTYTDKI THKIVGVKEV SDSEGNNVQA SNNTETAPSW VVDDKDSFAQ1080
 1081 ITKPVITDGK LAGRWLVTEA TANNAPEFTV PDPSDPNFKE VYDVTLKYVQ NVDADITYWD1140
 1141 ITYGMNRKIQ LGNTDPASDS EGRTGELIHF NNNEKRISNL ESQNYVFVDT DYHPTDKYGK1200
 1201 ETSHFNVYFR HAVKDITPNT PVDEVPKDPR GNLIVDPSDL HKEFTRNITF VANNDAKSPL1260
 1261 KDSVPQKVTF DGHVYVDMVT GQTTTPETVK DANGKNIQVA TTKAGNIEWN HDTQTMDEVV1320
 1321 RKYITLNTGD KYATSDDMVG TWHWISGVAN EITLKPTSTN PEDLVLVYEK NKSESGPDED1380
 1381 HDLPKVDVKQ ETKTFTRTVV YRGTKDGGVH FESVNGSPDG KNTYKQSVTF TRSIFSTTDK1440
 1441 DGKVTILKTA PWTAKDDTLG EVVSQTPSAV GYELVDIEKV DAYKINPNTD PEDLGETIVT1500
 1501 YSMKPKHETG PDEDHDLPKV DVKQETKTFT RTVVYRGTKD GGVHFESVDG SPDGKNTYKQ1560
 1561 SVTFTRSIFS TTDKDGKVTI LKTAPWTAKD DTLGEVASQT PSEVGYEVVD IDKVDAYKIN1620
 1621 PDKDNPDLGI VTVTYEATPT QPTTQPTEQP TSQPTAQPTE QPTSQPTAQP TEQPTSQPTA1680
 1681 QPTEQPTSQP TVQPTEQPTS QPTAQPTEQP TSQPTAQPTE QPTSQPTAQP TEQPTSQPTV1740
 1741 QPTEQPTSQP TAQPTEQPTS QPTAQPTEQP TSQPTAQPTE QPTSQPTAQP TEQPTSQPTA1800
 1801 QPTEQPTSQP TAQPTEQPTS QPTAQPTEQP TSQSTAQPSE QPTEQPAIES NTQLPGEQKN1860
 1861 EEPQPMTSQV TTKEDETSIV EPTSSSSTQP TTKQGTQQLP QTGNQKSSSL IGLGFASLLS1920
 1921 ALGLTKVNKK RKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle